This program creates abbreviation files for species names, and can apply those abbreviations to CLUSTAL alignment files.

Available via download only.
This program uses different files to create the abbreviations than the ones that it applies it to. Make sure you are using the right files for each operation.

Abbreviation files created manually or using some other tool are still compatible with this program so long as they follow the format given.

View sample input/output files. All files should be in a plain-text format (.txt, .csv, .xml, etc.).